数据库

TCGA数据库

CBIOPORTAL:http://www.cbioportal.org/

GEPIA

OncoLnc

kmplot:The Kaplan Meier plotter is capable to assess the effect of 54,675 genes on survival using 10,461 cancer samples. These include 5,143 breast, 1,816 ovarian, 2,437 lung and 1,065 gastric cancer patients with a mean follow-up of 69 / 40 / 49 / 33 months. Primary purpose of the tool is a meta-analysis based biomarker assessment

precog:PREdiction of Clinical Outcomes from Genomic Profiles.PRECOG is a system for querying associations between genomic profiles and cancer outcomes. It enables researchers to query whether, for example, high expression of a gene is prognostic for shorter or longer patient survival.

 

TF数据库：

cistrome:http://cistrome.org/db/#/

Factorbook:http://www.factorbook.org/human/chipseq/tf/

JASPAR:http://jaspar.genereg.net/

RBP数据库：

POSTAR2:http://lulab.life.tsinghua.edu.cn/postar/gene2.php

starBase:starBase v3.0 is an open-source platform for studying the miRNA-ncRNA, miRNA-mRNA, ncRNA-RNA, RNA-RNA, RBP-ncRNA and RBP-mRNA interactions from CLIP-seq, degradome-seq and RNA-RNA interactome data.

细胞系数据库：

CCLE