随笔档案「2020年9月30日」：Hybrid assembly of the large and highly ... - 王闯wangchuang2017

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

摘要： Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm 用马瑟阅读全文

posted @ 2020-09-30 21:45 王闯wangchuang2017 阅读(166) 评论(0) 推荐(0)

Efficient Hybrid De Novo Error Correction and Assembly for Long Reads

摘要： Efficient Hybrid De Novo Error Correction and Assembly for Long Reads Abstract: The new generation of long reads generated by Oxford nanopore sequenci 阅读全文

posted @ 2020-09-30 21:40 王闯wangchuang2017 阅读(133) 评论(0) 推荐(0)

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

摘要： Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm 用马瑟阅读全文

posted @ 2020-09-30 21:37 王闯wangchuang2017 阅读(168) 评论(0) 推荐(0)

HISEA: HIerarchical SEed Aligner for PacBio data

摘要： HISEA: HIerarchical SEed Aligner for PacBio data Nilesh Khiste & Lucian Ilie BMC Bioinformatics volume 18, Article number: 564 (2017) Cite this articl 阅读全文

posted @ 2020-09-30 21:36 王闯wangchuang2017 阅读(155) 评论(0) 推荐(0)

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

摘要： Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data 利用PacBio long-read和Illumina配对端测序数据构建两个籼稻参考基因组阅读全文

posted @ 2020-09-30 21:33 王闯wangchuang2017 阅读(219) 评论(0) 推荐(0)

Genome assembly using Nanopore-guided long and error-free DNA reads

摘要： Genome assembly using Nanopore-guided long and error-free DNA reads Mohammed-Amin Madoui, Stefan Engelen, Corinne Cruaud, Caroline Belser, Laurie Bert 阅读全文

posted @ 2020-09-30 21:30 王闯wangchuang2017 阅读(216) 评论(0) 推荐(0)

Hybrid assembly with long and short reads improves discovery of gene family expansions

摘要： Hybrid assembly with long and short reads improves discovery of gene family expansions 长链和短链杂交组合提高了基因家族扩展的发现 Jason R. Miller, Peng Zhou, Joann Mudge, 阅读全文

posted @ 2020-09-30 21:27 王闯wangchuang2017 阅读(262) 评论(0) 推荐(0)

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

摘要： Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomesAbstractIllumina sequencing allows rapid, cheap and 阅读全文

posted @ 2020-09-30 21:25 王闯wangchuang2017 阅读(126) 评论(0) 推荐(0)

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases

摘要： A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases 一种将长读取映射到大型引用数据库的快速近似算法 Authors Authors and affiliations Chirag Jain 阅读全文

posted @ 2020-09-30 21:23 王闯wangchuang2017 阅读(179) 评论(0) 推荐(0)

Inversion detection using PacBio long reads

摘要： Inversion detection using PacBio long readsStructural variations have received considerable attention in the past decade owing to their importance in 阅读全文

posted @ 2020-09-30 21:20 王闯wangchuang2017 阅读(105) 评论(0) 推荐(0)

Fast and accurate de novo genome assembly from long uncorrected reads

摘要： Fast and accurate de novo genome assembly from long uncorrected reads 快速和准确的从头基因组组装从长时间未纠正的read Robert Vaser1,5, Ivan Sović2,5, Niranjan Nagarajan3 an 阅读全文

posted @ 2020-09-30 21:15 王闯wangchuang2017 阅读(182) 评论(0) 推荐(0)

Nanopore sequencing and assembly of a human genome with ultra-long reads

摘要： Nanopore sequencing and assembly of a human genome with ultra-long reads Miten Jain, Sergey Koren, […] Matthew Loose Nature Biotechnology volume 36, p 阅读全文

posted @ 2020-09-30 21:08 王闯wangchuang2017 阅读(288) 评论(0) 推荐(0)

Genome Sequencing and Assembly by Long Reads in Plants

摘要： Genome Sequencing and Assembly by Long Reads in Plants 植物基因组的长read测序和组装 by 1 College of Agronomy, Shenyang Agricultural University, 120 Dongling Road, 阅读全文

posted @ 2020-09-30 21:06 王闯wangchuang2017 阅读(159) 评论(0) 推荐(0)

SiLiCO: A Simulator of Long Read Sequencing in PacBio and Oxford Nanopore

摘要： SiLiCO: A Simulator of Long Read Sequencing in PacBio and Oxford Nanopore 硅:在PacBio和牛津纳米孔长读测序的模拟器 View ORCID ProfileEthan Alexander García Baker, Sara 阅读全文

posted @ 2020-09-30 21:03 王闯wangchuang2017 阅读(203) 评论(0) 推荐(0)

The advantages and disadvantages of short- and long-read metagenomics to infer bacterial and eukaryotic community composition

摘要：短读宏基因组学和长读宏基因组学在推断细菌和真核生物群落组成方面的优缺点 Abstract Background The first step in understanding ecological community diversity and dynamics is quantifying com 阅读全文

posted @ 2020-09-30 20:57 王闯wangchuang2017 阅读(148) 评论(0) 推荐(0)

Non Hybrid Long Read Consensus Using Local De Bruijn Graph Assembly 非混合长读一致性使用局部德布鲁因图装配

摘要： Non Hybrid Long Read Consensus Using Local De Bruijn Graph Assembly 非混合长读一致性使用局部德布鲁因图装配 German Tischler, Eugene W. Myers doi: https://doi.org/10.1101/ 阅读全文

posted @ 2020-09-30 20:54 王闯wangchuang2017 阅读(179) 评论(0) 推荐(0)

PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores

摘要： PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada Bioinformatic 阅读全文

posted @ 2020-09-30 20:53 王闯wangchuang2017 阅读(373) 评论(0) 推荐(0)

The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read tools

摘要： The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read tools 长和短:用短读工具解锁纳米孔长读RNA测序数据 View ORCID ProfileXueyi D 阅读全文

posted @ 2020-09-30 20:50 王闯wangchuang2017 阅读(164) 评论(0) 推荐(0)

Improving the sensitivity of long read overlap detection using grouped short k-mer matches

摘要： Improving the sensitivity of long read overlap detection using grouped short k-mer matches Nan Du, Jiao Chen & Yanni Sun BMC Genomics volume 20, Artic 阅读全文

posted @ 2020-09-30 20:45 王闯wangchuang2017 阅读(143) 评论(0) 推荐(0)

大数据与精准医学

摘要：大数据与精准医学来自《中国科研信息化蓝皮书2015》作者：陈扬勇[i] 出版日期：2016-03 ISBN：978-7-03-047716-3 中图法分类：G322 推荐机构购买购买（2.68）收藏复制引文分享内容提要在地球上繁衍了几十亿年的生物，从病毒、细菌到高等动、植物，千姿百阅读全文

posted @ 2020-09-30 20:44 王闯wangchuang2017 阅读(273) 评论(0) 推荐(0)

Long-read sequencing data analysis for yeasts

摘要： Long-read sequencing data analysis for yeasts 酵母长read测序数据分析 Jia-Xing Yue & Gianni Liti Nature Protocols volume 13, pages1213–1231(2018)Cite this artic 阅读全文

posted @ 2020-09-30 20:41 王闯wangchuang2017 阅读(146) 评论(0) 推荐(0)

Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools

摘要： Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools 通过合成基因组库的长读测序完成细菌基因组草图 Hooman Derakhshani, Steve P. Bernier, 阅读全文

posted @ 2020-09-30 20:07 王闯wangchuang2017 阅读(196) 评论(0) 推荐(0)

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data

摘要： Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data 长读纠错软件应用于纳米孔rna测序数据的比较评估 Abstract Motivation Nan 阅读全文

posted @ 2020-09-30 20:05 王闯wangchuang2017 阅读(204) 评论(0) 推荐(0)

Single-molecule long-read sequencing facilitates shrimp transcriptome research

摘要： Single-molecule long-read sequencing facilitates shrimp transcriptome research 单分子长read测序促进了虾的转录组研究 Abstract Although shrimp are of great economic imp 阅读全文

posted @ 2020-09-30 20:01 王闯wangchuang2017 阅读(382) 评论(0) 推荐(0)

Benchmarking of long-read assemblers for prokaryote whole genome sequencing

摘要： Benchmarking of long-read assemblers for prokaryote whole genome sequencing 原核生物全基因组测序的长read组装的基准 Ryan R. Wick, Conceptualization, Data Curation, Fo 阅读全文

posted @ 2020-09-30 19:58 王闯wangchuang2017 阅读(395) 评论(0) 推荐(0)

A new era of long-read sequencing for cancer genomics

摘要： A new era of long-read sequencing for cancer genomics 癌症基因组学长read测序的新时代 Yoshitaka Sakamoto, Sarun Sereewattanawoot & Ayako Suzuki Journal of Human Gen 阅读全文

posted @ 2020-09-30 19:41 王闯wangchuang2017 阅读(251) 评论(0) 推荐(0)

Long-Read Sequencing – A Powerful Tool in Viral Transcriptome Research

摘要： Long-Read Sequencing – A Powerful Tool in Viral Transcriptome Research 长读测序-病毒转录组研究中的一个强大工具 Author links open overlay panelZsoltBoldogkői1NorbertMoldo 阅读全文

posted @ 2020-09-30 19:39 王闯wangchuang2017 阅读(204) 评论(0) 推荐(0)

Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data

摘要： Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation captur 阅读全文

posted @ 2020-09-30 19:38 王闯wangchuang2017 阅读(168) 评论(0) 推荐(0)

Illumina short-read and MinION long-read WGS to characterize the molecular epidemiology of an NDM-1 Serratia marcescens outbreak in Romania

摘要： Illumina short-read and MinION long-read WGS to characterize the molecular epidemiology of an NDM-1 Serratia marcescens outbreak in Romania Illumina s 阅读全文

posted @ 2020-09-30 19:33 王闯wangchuang2017 阅读(199) 评论(0) 推荐(0)

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

摘要： Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes 长read测序技术在复杂细菌基因组杂交组装中的比较 Nicola De Maio, 1 ,† Li 阅读全文

posted @ 2020-09-30 19:32 王闯wangchuang2017 阅读(351) 评论(0) 推荐(0)

A single-molecule long-read survey of the human transcriptome

摘要： A single-molecule long-read survey of the human transcriptome 对人类转录组的单分子长read调查 Donald Sharon, Hagen Tilgner, Fabian Grubert & Michael Snyder Nature B 阅读全文

posted @ 2020-09-30 19:30 王闯wangchuang2017 阅读(156) 评论(0) 推荐(0)

Long-read sequencing and de novo assembly of a Chinese genome 一个中国人基因组的长读测序和重新组装

摘要： Abstract Short-read sequencing has enabled the de novo assembly of several individual human genomes, but with inherent limitations in characterizing r 阅读全文

posted @ 2020-09-30 19:28 王闯wangchuang2017 阅读(347) 评论(0) 推荐(0)

Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications

摘要： Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications 短读、阅读全文

posted @ 2020-09-30 19:25 王闯wangchuang2017 阅读(138) 评论(0) 推荐(0)

Reference Grade Characterization of Polymorphisms in Full-Length HLA Class I and II Genes With Short-Read

摘要： Reference Grade Characterization of Polymorphisms in Full-Length HLA Class I and II Genes With Short-Read Sequencing on the ION PGM System and Long-Re 阅读全文

posted @ 2020-09-30 19:20 王闯wangchuang2017 阅读(138) 评论(0) 推荐(0)

An Improved Melon Reference Genome With Single-Molecule Sequencing Uncovers a Recent Burst of Transposable Elements With Potential Impact on Genes

摘要： An Improved Melon Reference Genome With Single-Molecule Sequencing Uncovers a Recent Burst of Transposable Elements With Potential Impact on Genes 一种改阅读全文

posted @ 2020-09-30 19:18 王闯wangchuang2017 阅读(197) 评论(0) 推荐(0)

Integrated single-molecule long-read sequencing and Illumina sequencing reveal the resistance mechanism of Psathyrostachys huashanica in response to barley yellow dwarf virus-GAV

摘要： Integrated single-molecule long-read sequencing and Illumina sequencing reveal the resistance mechanism of Psathyrostachys huashanica in response to b 阅读全文

posted @ 2020-09-30 18:14 王闯wangchuang2017 阅读(171) 评论(0) 推荐(0)

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