fMRIPrep
Setup Environment
Case 1 : Use Docker
Step1 Install Docker
apt-get install docker.io -y
apt-get install docker-compose -y
Add user which can execute docker
sudo usermod -aG docker ${USER}
Pull Docker images
docker pull nipreps/fmriprep:20.2.2
docker pull nipreps/fmriprep:latest
Method to process data
fmriprep-docker /path/to/data/dir /path/to/output/dir participant RUNNING: docker run --rm -it -v /path/to/data/dir:/data:ro \ -v /path/to_output/dir:/out nipreps/fmriprep:20.2.2 \ /data /out participant
Refer :
https://www.nipreps.org/apps/docker/#running-a-niprep-with-a-lightweight-wrapper
https://fmriprep.org/en/stable/