小技巧003-伪并行重构流场

OpenFOAM的reconstructPar是单核程序，对于较大的算例重构流场时间过长，而reconstrctPar程序可以指定重构某一段时间的流场：

reconstructPar -time start:end

可以将所需要重构的流场时间范围分成不同的小段，分别重构不同时间段的流场，实现reconstrctPar的伪并行（reconstrctParallel）：

#!/bin/bash

# Prompt the user to enter three numbers
echo "Please enter three numbers: startTime endTime procNums >"

# Read the input and save each number to a separate variable
read a b c # startTime endTime np

# Calculate the length of each segment
segmentLength=$(echo "scale=2; ($b - $a) / $c" | bc)

# Initialize an empty array to store the segments
segments=()

# Loop through the number of segments and calculate the start and end points for each segment
for ((i=0; i<$c; i++)); do
  start=$(echo "scale=2; $a + $i * $segmentLength" | bc)
  end=$(echo "scale=2; $start + $segmentLength" | bc)

  # Add the segment to the array
  segments+=("$start $end")
done

# Print the array of segments
echo "${segments[@]}"

ID=1
# Loop through the segments array and execute the command "nohup reconstructPar -time begin:end" for each segment
for segment in "${segments[@]}"; do
  # Extract the start and end points from the segment string
  start=$(echo "$segment" | cut -d' ' -f1)
  end=$(echo "$segment" | cut -d' ' -f2)

  # Execute the command with the start and end points
  nohup reconstructPar -time "$start:$end" &

done

每次调用都要复制这个bash太过于麻烦，我的方法是把这个bash脚本保存到 " ~/bin "路径下，然后将这个路径添加到环境变量，在bashrc中加上这样一行：

1	`PATH=$PATH:~/bin`

这样重构流场时只需要输入 “reconstrctParallel”，然后输入 statTime endTime procNums就可以了：

(base) [wli@k012 bubbleUg=0.2-5]$ reconstructParaller
Please enter three numbers: startTime endTime procNums >
0 20 20

程序是在后台运行的，使用了nohup命令，屏幕输入重定向到 “nohup.out” ，可以用“tail -f nohup.out”命令查看，重构结束后，nohup.out文件显示：

(base) [wli@k012 snappyTFM3]$ tail -f nohup.out

Reconstructing point fields

No point fields

No lagrangian fields

Reconstructing sets:
End.

reconstrctPar对CPU占用很少，多开进程也不会影响他人使用：

(base) [wli@k012 bubbleUg=0.2-5]$ top -u wli
top - 17:23:29 up 29 days,  5:20, 16 users,  load average: 9.31, 7.41, 10.39
Tasks: 1912 total,  19 running, 1886 sleeping,   5 stopped,   2 zombie
%Cpu(s): 21.9 us,  1.6 sy,  0.0 ni, 61.7 id, 14.8 wa,  0.0 hi,  0.1 si,  0.0 st
KiB Mem : 13148552+total,   518524 free, 39881476 used, 91085520 buff/cache
KiB Swap:  8388604 total,        0 free,  8388604 used. 90150360 avail Mem

   PID USER      PR  NI    VIRT    RES    SHR S  %CPU %MEM     TIME+ COMMAND
179927 wli       20   0  161136  54012  17384 R  50.3  0.0   0:04.30 reconstruct+
179955 wli       20   0  161136  54156  17412 R  50.3  0.0   0:04.06 reconstruct+
179913 wli       20   0  156268  49048  17336 R  48.0  0.0   0:03.88 reconstruct+
179899 wli       20   0  156268  49208  17340 R  46.7  0.0   0:04.05 reconstruct+
179948 wli       20   0  161576  54456  17412 D  46.7  0.0   0:04.21 reconstruct+
179941 wli       20   0  155464  48256  17316 R  44.7  0.0   0:03.99 reconstruct+
179934 wli       20   0  161136  54156  17412 R  44.4  0.0   0:04.06 reconstruct+
179906 wli       20   0  161136  54016  17384 R  42.1  0.0   0:03.82 reconstruct+
179836 wli       20   0  161576  54588  17412 D  40.1  0.0   0:04.10 reconstruct+
179871 wli       20   0  161132  54016  17384 D  39.8  0.0   0:03.91 reconstruct+
179829 wli       20   0  161132  54156  17412 D  38.5  0.0   0:04.12 reconstruct+
179920 wli       20   0  161576  54588  17412 D  38.5  0.0   0:04.01 reconstruct+
179821 wli       20   0  162652  55700  17408 R  37.5  0.0   0:04.07 reconstruct+
179892 wli       20   0  161576  54432  17412 D  37.2  0.0   0:04.30 reconstruct+
179885 wli       20   0  161576  54588  17412 R  36.8  0.0   0:04.12 reconstruct+
179850 wli       20   0  161576  54584  17412 D  36.5  0.0   0:04.00 reconstruct+
179878 wli       20   0  161576  54588  17412 R  35.5  0.0   0:04.11 reconstruct+
179843 wli       20   0  161576  54588  17412 D  34.9  0.0   0:04.24 reconstruct+
179864 wli       20   0  161576  54588  17412 D  34.5  0.0   0:04.01 reconstruct+
179857 wli       20   0  161576  54408  17412 D  34.2  0.0   0:03.78 reconstruct+
179963 wli       20   0  163888   4376   1644 R   1.3  0.0   0:00.10 top
 37992 wli       20   0  965040  60628      0 S   0.0  0.0   0:11.72 hexo
 76318 wli       20   0  152476   2220    900 S   0.0  0.0   0:00.03 sshd
 76325 wli       20   0  121176   3772   1832 S   0.0  0.0   0:00.20 bash
143338 wli       20   0  152780   2828   1240 S   0.0  0.0   0:02.30 sshd
143348 wli       20   0  121184   3844   1852 S   0.0  0.0   0:01.46 bash
143392 wli       20   0  152472   2304    964 S   0.0  0.0   0:00.05 sshd
143404 wli       20   0   55364   2260   1600 S   0.0  0.0   0:00.20 sftp-server
174260 wli       20   0  113144   1184    968 T   0.0  0.0   0:00.00 reconstruct+
174281 wli       20   0  113144   1184    964 T   0.0  0.0   0:00.00 reconstruct+
175276 wli       20   0  113144   1184    964 T   0.0  0.0   0:00.00 reconstruct+
175328 wli       20   0  113144   1184    968 T   0.0  0.0   0:00.00 reconstruct+
175608 wli       20   0  113144   1184    964 T   0.0  0.0   0:00.00 reconstruct+
185785 wli       20   0  152472   2320    972 S   0.0  0.0   0:01.69 sshd
185791 wli       20   0  121180   3788   1844 S   0.0  0.0   0:00.35 bash