参考:http://samtools.github.io/bcftools/bcftools.html
装bcftools
$ tar -jxvf bcftools-1.8.tar.bz2
$ cd bcftools-1.8
$ ./configure
$ make
$ make install
$ echo 'PATH=$PATH:/software/bcftools-1.8/' >> ~/.bashrc
$ source ~/.bashrc
装htslib
$ tar -jxvf htslib-1.8.tar.bz2
$ cd htslib-1.8
$ ./configure
$ make
$ make install
$ echo 'PATH=$PATH:/software/htslib-1.8/' >> ~/.bashrc
$ source ~/.bashrc
提取前
$ bgzip -c test.snp.vcf > test..snp.vcf.gz
$ tabix -p vcf test.snp.vcf.gz
提取序列
$ bcftools consensus -f test.cds.fasta -H A test.snp.vcf.gz -o test.val.fasta
