centos7中安装boost，gsl 和 treemix

 

001、安装boost依赖环境

boost 是一个跨平台的 c++ 库集合，它提供了许多功能和工具，用于在 linux 上开发高性能的应用程序。

yum -y install bzip2 bzip2-devel bzip2-libs python-devel

 

 

002、下载最新安装包

https://archives.boost.io/release/1.86.0/source/boost_1_86_0.tar.bz2

 

wget -c https://archives.boost.io/release/1.86.0/source/boost_1_86_0.tar.bz2
 tar -xjvf boost_1_86_0.tar.bz2
./bootstrap.sh --with-libraries=all --with-toolset=gcc
./b2 install --prefix=/usr/local

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003、安装gls

GSL（GNU Scientific Library）是一个开源的科学计算库，主要用于C和C++程序。它包含了大量高效的数学函数，适用于各种科学计算任务‌‌。

wget -c http://ftp.club.cc.cmu.edu/pub/gn
tar -xzvf gsl-latest.tar.gz
./configure
make
make install
export PATH=$PATH:/usr/local/bin
export C_INCLUDE_PATH=$C_INCLUDE_PATH:/usr/local/include
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib
export GSL_LD=/usr/local/lib

 

004、下载及安装treemix

wget -c https://bitbucket.org/nygcresearch/treemix/downloads/treemix-1.13.tar.gz
cd treemix-1.13/
./configure
make
make install

 

005、调用测试

(base) [root@PC1 home]# treemix

TreeMix v. 1.13
$Revision: 231 $

Options:
-h display this help
-i [file name] input file
-o [stem] output stem (will be [stem].treeout.gz, [stem].cov.gz, [stem].modelcov.gz)
-k [int] number of SNPs per block for estimation of covariance matrix (1)
-global Do a round of global rearrangements after adding all populations
-tf [file name] Read the tree topology from a file, rather than estimating it
-m [int] number of migration edges to add (0)
-root [string] comma-delimited list of populations to set on one side of the root (for migration)
-g [vertices file name] [edges file name] read the graph from a previous TreeMix run
-se Calculate standard errors of migration weights (computationally expensive)
-micro microsatellite data
-bootstrap Perform a single bootstrap replicate
-cor_mig [file] list of known migration events to include (also use -climb)
-noss Turn off sample size correction
-seed [int] Set the seed for random number generation
-n_warn [int] Display first N warnings

 

 

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