./configure应用案例
111111111、
以vcftools为例：
001、解压软件，查看软件内容
[root@pc1 software]# ls vcftools-0.1.16.tar.gz [root@pc1 software]# tar -xzf vcftools-0.1.16.tar.gz ## 解压缩 [root@pc1 software]# ls vcftools-0.1.16 vcftools-0.1.16.tar.gz [root@pc1 software]# cd vcftools-0.1.16/ ## 进入软件目录 [root@pc1 vcftools-0.1.16]# ls ## 查看内容 aclocal.m4 build-aux configure examples Makefile.am README.md autogen.sh compile configure.ac install-sh Makefile.in src autom4te.cache config.h.in depcomp LICENSE missing
002、记录当前目录下的文件内容
[root@pc1 vcftools-0.1.16]# ls aclocal.m4 build-aux configure examples Makefile.am README.md autogen.sh compile configure.ac install-sh Makefile.in src autom4te.cache config.h.in depcomp LICENSE missing [root@pc1 vcftools-0.1.16]# find ./ -maxdepth 1 >> /tmp/check.txt ## 放入/tmp目录
003、执行./configure动作
[root@pc1 vcftools-0.1.16]# ./configure ## 配置 [root@pc1 vcftools-0.1.16]# ls aclocal.m4 compile config.status examples Makefile.am src autogen.sh config.h configure install-sh Makefile.in stamp-h1 autom4te.cache config.h.in configure.ac LICENSE missing build-aux config.log depcomp Makefile README.md
004、记录当前目录的文件
[root@pc1 vcftools-0.1.16]# find ./ -maxdepth 1 >> /tmp/check.txt ## 追加到之前的记录文件中 [root@pc1 vcftools-0.1.16]# cat /tmp/check.txt | sort | uniq -u ## 列出执行configure之后新生成的文件 ./config.h ./config.log ./config.status ./Makefile ## 生成了编译文件 ./stamp-h1
。
2222222、
以samtools为例，并非所有.configure动作都产生makefile文件
001、解压文件
samtools-1.18.tar.bz2 [root@pc1 software]# tar -xjf samtools-1.18.tar.bz2 ## 解压文件 [root@pc1 software]# ls samtools-1.18 samtools-1.18.tar.bz2 [root@pc1 software]# cd samtools-1.18/ ## 进入目录 [root@pc1 samtools-1.18]# ls amplicon_stats.c bam_lpileup.c bam_tview.c doc sam_opts.h AUTHORS bam_lpileup.h bam_tview_curses.c examples sample.c bam2bcf.c bam_markdup.c bam_tview.h faidx.c sample.h bam2bcf.h bam_mate.c bam_tview_html.c htslib-1.18 samtools.h bam2depth.c bam_md.c bedcov.c INSTALL sam_utils.c bam_addrprg.c bam_plbuf.c bedidx.c install-sh sam_utils.h bam_ampliconclip.c bam_plbuf.h bedidx.h LICENSE sam_view.c bam_ampliconclip.h bam_plcmd.c ChangeLog.old lz4 splaysort.h bam_aux.c bam_quickcheck.c config.h.in m4 stats.c bam.c bam_reheader.c config.mk.in Makefile stats_isize.c bam_cat.c bam_rmdup.c configure misc stats_isize.h bam_color.c bam_rmdupse.c configure.ac NEWS test bam_consensus.c bam_samples.c consensus_pileup.c padding.c tmp_file.c bam_fastq.c bamshuf.c consensus_pileup.h phase.c tmp_file.h bam_flags.c bam_sort.c coverage.c README version.sh bam.h bam_split.c cram_size.c reference.c bam_import.c bam_stat.c cut_target.c reset.c bam_index.c bamtk.c dict.c sam_opts.c
002、记录当前文件
[root@pc1 samtools-1.18]# ls amplicon_stats.c bam_lpileup.c bam_tview.c doc sam_opts.h AUTHORS bam_lpileup.h bam_tview_curses.c examples sample.c bam2bcf.c bam_markdup.c bam_tview.h faidx.c sample.h bam2bcf.h bam_mate.c bam_tview_html.c htslib-1.18 samtools.h bam2depth.c bam_md.c bedcov.c INSTALL sam_utils.c bam_addrprg.c bam_plbuf.c bedidx.c install-sh sam_utils.h bam_ampliconclip.c bam_plbuf.h bedidx.h LICENSE sam_view.c bam_ampliconclip.h bam_plcmd.c ChangeLog.old lz4 splaysort.h bam_aux.c bam_quickcheck.c config.h.in m4 stats.c bam.c bam_reheader.c config.mk.in Makefile stats_isize.c bam_cat.c bam_rmdup.c configure misc stats_isize.h bam_color.c bam_rmdupse.c configure.ac NEWS test bam_consensus.c bam_samples.c consensus_pileup.c padding.c tmp_file.c bam_fastq.c bamshuf.c consensus_pileup.h phase.c tmp_file.h bam_flags.c bam_sort.c coverage.c README version.sh bam.h bam_split.c cram_size.c reference.c bam_import.c bam_stat.c cut_target.c reset.c bam_index.c bamtk.c dict.c sam_opts.c ## 记录当前文件 [root@pc1 samtools-1.18]# find ./ -maxdepth 1 -type f | xargs -n 1 md5sum >> /tmp/check2.txt
003、执行.configure
[root@pc1 samtools-1.18]# ./configure ## 配置 [root@pc1 samtools-1.18]# ls amplicon_stats.c bam_lpileup.h bam_tview.h dict.c sam_opts.h AUTHORS bam_markdup.c bam_tview_html.c doc sample.c bam2bcf.c bam_mate.c bedcov.c examples sample.h bam2bcf.h bam_md.c bedidx.c faidx.c samtools.h bam2depth.c bam_plbuf.c bedidx.h htslib-1.18 sam_utils.c bam_addrprg.c bam_plbuf.h ChangeLog.old INSTALL sam_utils.h bam_ampliconclip.c bam_plcmd.c config.h install-sh sam_view.c bam_ampliconclip.h bam_quickcheck.c config.h.in LICENSE splaysort.h bam_aux.c bam_reheader.c config.log lz4 stats.c bam.c bam_rmdup.c config.mk m4 stats_isize.c bam_cat.c bam_rmdupse.c config.mk.in Makefile stats_isize.h bam_color.c bam_samples.c config.status misc test bam_consensus.c bamshuf.c configure NEWS tmp_file.c bam_fastq.c bam_sort.c configure.ac padding.c tmp_file.h bam_flags.c bam_split.c consensus_pileup.c phase.c version.sh bam.h bam_stat.c consensus_pileup.h README bam_import.c bamtk.c coverage.c reference.c bam_index.c bam_tview.c cram_size.c reset.c bam_lpileup.c bam_tview_curses.c cut_target.c sam_opts.c
004、检查configure前后文件的变化
[root@pc1 samtools-1.18]# find ./ -maxdepth 1 -type f | xargs -n 1 md5sum >> /tmp/check2.txt ## 追加 [root@pc1 samtools-1.18]# cat /tmp/check2.txt | sort | uniq -u ## 检查configure之后发生变化的文件 14178af89a391bc46975f9f88c50684d ./config.h 28888782132cd85c5ef0e912df588e4d ./config.mk df9b5b81f2072af58f86f071f6ca6a12 ./config.status fd4795d3351ae270b6f07edadd9dc338 ./config.log
。
