centos7中 组装软件 MaSuRCA 的安装

 

001、下载最新安装包

下载地址：https://github.com/alekseyzimin/masurca/releases

 

002、解压，进入安装目录

tar -xzvf MaSuRCA-4.1.0.tar.gz
cd MaSuRCA-4.1.0/

 

003、安装依赖

(base) [root@pc1 MaSuRCA-4.1.0]# yum -y install boost boost-devel gcc-c++.x86_64 gperf zlib-devel bzip2* perl-devel perl-Env.noarch

 

004、执行安装程序

(base) [root@pc1 MaSuRCA-4.1.0]# ls
Flye  global-1  install.sh  LICENSE.txt  PkgConfig.pm
(base) [root@pc1 MaSuRCA-4.1.0]# bash install.sh

 

 

005、调用测试

(base) [root@pc1 MaSuRCA-4.1.0]# cd bin/         ## 进入可执行程序目录
(base) [root@pc1 bin]# ./masurca --version       ## 查看版本
version 4.1.0
(base) [root@pc1 bin]# ./masurca -h |head        ## 查看帮助
Create the assembly script from a MaSuRCA configuration file. A
sample configuration file can be generated with the -g switch. The
assembly script assemble.sh will run the assembly proper. For a
quick run without creating a configuration file, and with two Illumina
paired end reads files (forward/reverse) and (optionally) a
long reads (Nanopore/PacBio) file use -i switch, setting the number of threads with -t:

masurca -i paired_ends_fwd.fastq.gz -t 32
or
masurca -i paired_ends_fwd.fastq.gz,paired_ends_rev.fastq.gz -t 32

 。