linux 中安装 RSeQC 软件
001、ubuntu系统
(base) root@DESKTOP-IDT9S0E:~# lsb_release -a No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 20.04.5 LTS Release: 20.04 Codename: focal
02、查找该软件下的任意一个包
(base) root@DESKTOP-IDT9S0E:~# find ~ -name "bam2fq.py" ## 没有检索结果,说明该软件没有安装 (base) root@DESKTOP-IDT9S0E:~#
03、使用pip命令安装
(base) root@DESKTOP-IDT9S0E:~# pip install RSeQC Collecting RSeQC Using cached RSeQC-5.0.1-py3-none-any.whl (149 kB) Requirement already satisfied: cython>=0.17 in ./anaconda3/lib/python3.9/site-packages (from RSeQC) (0.29.28) Requirement already satisfied: pysam in ./anaconda3/lib/python3.9/site-packages/pysam-0.21.0-py3.9-linux-x86_64.egg (from RSeQC) (0.21.0) Requirement already satisfied: bx-python in ./anaconda3/lib/python3.9/site-packages/bx_python-0.9.0-py3.9-linux-x86_64.egg (from RSeQC) (0.9.0) Requirement already satisfied: numpy in ./anaconda3/lib/python3.9/site-packages (from RSeQC) (1.21.5) Requirement already satisfied: pyBigWig in ./anaconda3/lib/python3.9/site-packages (from RSeQC) (0.3.22) Installing collected packages: RSeQC Successfully installed RSeQC-5.0.1 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
04、再次查找该软件的一个包
(base) root@DESKTOP-IDT9S0E:~# find ~ -name "bam2fq.py" ## 该包出现,提示安装成功 /root/anaconda3/bin/bam2fq.py