linux中vcf2phylip软件的安装

 

001、软件下载，github

 

 

 

 

 

 

 

 

 

 

 

 

[root@PC1 phylip]# wget https://github.com/edgardomortiz/vcf2phylip/archive/refs/tags/v2.8.tar.gz
[root@PC1 phylip]# ls
v2.8.tar.gz
[root@PC1 phylip]# ll -h
total 20K
-rw-r--r--. 1 root root 20K Dec 31 10:33 v2.8.tar.gz

 

002、解压软件并安装

[root@PC1 phylip]# tar -xzvf v2.8.tar.gz
[root@PC1 phylip]# cd vcf2phylip-2.8/
[root@PC1 vcf2phylip-2.8]# ls
LICENSE  README.md  vcf2phylip.py

 

 

003、调用测试

[root@PC1 vcf2phylip-2.8]# ls
LICENSE  README.md  vcf2phylip.py
[root@PC1 vcf2phylip-2.8]# ./vcf2phylip.py
usage: vcf2phylip.py [-h] -i FILENAME [--output-folder FOLDER] [--output-prefix PREFIX] [-m MIN_SAMPLES_LOCUS] [-o OUTGROUP] [-p] [-f] [-n] [-b]
                     [-r] [-w] [-v]
vcf2phylip.py: error: the following arguments are required: -i/--input