linux中vcf2phylip软件的安装
001、软件下载,github
[root@PC1 phylip]# wget https://github.com/edgardomortiz/vcf2phylip/archive/refs/tags/v2.8.tar.gz [root@PC1 phylip]# ls v2.8.tar.gz [root@PC1 phylip]# ll -h total 20K -rw-r--r--. 1 root root 20K Dec 31 10:33 v2.8.tar.gz
002、解压软件并安装
[root@PC1 phylip]# tar -xzvf v2.8.tar.gz [root@PC1 phylip]# cd vcf2phylip-2.8/ [root@PC1 vcf2phylip-2.8]# ls LICENSE README.md vcf2phylip.py
003、调用测试
[root@PC1 vcf2phylip-2.8]# ls LICENSE README.md vcf2phylip.py [root@PC1 vcf2phylip-2.8]# ./vcf2phylip.py usage: vcf2phylip.py [-h] -i FILENAME [--output-folder FOLDER] [--output-prefix PREFIX] [-m MIN_SAMPLES_LOCUS] [-o OUTGROUP] [-p] [-f] [-n] [-b] [-r] [-w] [-v] vcf2phylip.py: error: the following arguments are required: -i/--input