centos7中安装delly软件

 

001、系统

[root@localhost home]# cat /etc/redhat-release
CentOS Linux release 7.9.2009 (Core)

 

方法1 conda安装

01、创建python环境

[root@localhost home]# conda create -n py38 python=3.8

 

02、进入创建的python环境

[root@localhost home]# conda activate py38

 

03、conda安装delly0.7.6（其他版本会报错）

(py38) [root@localhost home]# conda install -c bioconda delly=0.7.6

 

04、调用delly测试

(py38) [root@localhost home]# delly
**********************************************************************
Program: Delly
This is free software, and you are welcome to redistribute it under
certain conditions (GPL); for license details use '-l'.
This program comes with ABSOLUTELY NO WARRANTY; for details use '-w'.

Delly (Version: 0.7.6)
Contact: Tobias Rausch (rausch@embl.de)
**********************************************************************

Usage: delly <command> <arguments>

Commands:

    call         discover and genotype structural variants
    merge        merge structural variants across VCF/BCF files and within a single VCF/BCF file
    filter       filter somatic or germline structural variants

 

方法：2 直接下载可执行程序

01、

下载地址：https://github.com/dellytools/delly/releases/download/v1.1.5/delly_v1.1.5_linux_x86_64bit

 

 

 

[root@localhost delly]# wget https://github.com/dellytools/delly/releases/download/v1.1.5/delly_v1.1.5_linux_x86_64bit

 

02、赋予可执行权限

[root@localhost delly]# ls
delly_v1.1.5_linux_x86_64bit
[root@localhost delly]# chmod 755 delly_v1.1.5_linux_x86_64bit
[root@localhost delly]# ls
delly_v1.1.5_linux_x86_64bit

 

 

 

03、调用测试

[root@localhost delly]# ./delly_v1.1.5_linux_x86_64bit