centos7中sambamba软件的安装

 

001、系统

[root@localhost ~]# cat /etc/redhat-release
CentOS Linux release 7.9.2009 (Core)

 

002、创建python2.7环境

[root@localhost ~]# conda create -n py27 python=2.7

 

003、进入python2.7环境

[root@localhost ~]# conda activate py27

 

004、利用conda安装sambamba软件

(py27) [root@localhost ~]# conda install -c bioconda sambamba

 

005、测试安装效果

(py27) [root@localhost ~]# sambamba
sambamba 0.6.6

Usage: sambamba [command] [args...]

    Available commands: 'view', 'index', 'merge', 'sort',
                        'flagstat', 'slice', 'markdup', 'depth', 'mpileup'
    To get help on a particular command, just call it without args.

Leave bug reports and feature requests at
https://github.com/lomereiter/sambamba/issues