gtfToGenePred软件的安装
1、下载地址:http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/
2、赋予权限
root@DESKTOP-1N42TVH:/home/software# ll -h total 34M drwxr-xr-x 4 root root 4.0K Apr 30 00:01 ./ drwxr-xr-x 7 root root 4.0K Apr 27 23:38 ../ -rw-r--r-- 1 root root 34M Apr 30 00:01 gtfToGenePred drwxr-xr-x 12 root root 4.0K Apr 27 23:56 picard/ drwxr-xr-x 2 root root 4.0K Apr 29 16:20 plink/ root@DESKTOP-1N42TVH:/home/software# chmod 755 gtfToGenePred root@DESKTOP-1N42TVH:/home/software# ll -h total 34M drwxr-xr-x 4 root root 4.0K Apr 30 00:01 ./ drwxr-xr-x 7 root root 4.0K Apr 27 23:38 ../ -rwxr-xr-x 1 root root 34M Apr 30 00:01 gtfToGenePred* drwxr-xr-x 12 root root 4.0K Apr 27 23:56 picard/ drwxr-xr-x 2 root root 4.0K Apr 29 16:20 plink/ root@DESKTOP-1N42TVH:/home/software# ./gtfToGenePred gtfToGenePred - convert a GTF file to a genePred usage: gtfToGenePred gtf genePred options: -genePredExt - create a extended genePred, including frame information and gene name -allErrors - skip groups with errors rather than aborting. Useful for getting infomation about as many errors as possible. -ignoreGroupsWithoutExons - skip groups contain no exons rather than generate an error. -infoOut=file - write a file with information on each transcript -sourcePrefix=pre - only process entries where the source name has the specified prefix. May be repeated. -impliedStopAfterCds - implied stop codon in after CDS -simple - just check column validity, not hierarchy, resulting genePred may be damaged -geneNameAsName2 - if specified, use gene_name for the name2 field instead of gene_id. -includeVersion - it gene_version and/or transcript_version attributes exist, include the version in the corresponding identifiers.
没有问题。