利用picard对参考基因组构建dict文件

 

1、方式1

 

 

root@DESKTOP-1N42TVH:/home/test/test2# ls
Arabidopsis_thaliana.TAIR10.dna.toplevel.fa
root@DESKTOP-1N42TVH:/home/test/test2# java -jar /home/software/picard/build/libs/picard.jar CreateSequenceDictionary R=Arabidopsis_thaliana.TAIR10.dna.toplevel.fa O=Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.dict
root@DESKTOP-1N42TVH:/home/test/test2# ls
Arabidopsis_thaliana.TAIR10.dna.toplevel.fa  Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.dict

 

2、方式2：

[root@8ec9dd73f438  09:49:52 /work/my_reseq/ref/test2]# ls
Arabidopsis_thaliana.TAIR10.dna.toplevel.fa
[root@8ec9dd73f438  09:49:53 /work/my_reseq/ref/test2]# picard CreateSequenceDictionary R=Arabidopsis_thaliana.TAIR10.dna.toplevel.fa O=Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.dict
[root@8ec9dd73f438  09:50:06 /work/my_reseq/ref/test2]# ls
Arabidopsis_thaliana.TAIR10.dna.toplevel.fa  Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.dict

 

posted @ 2022-04-27 09:51  小鲨鱼2018  阅读(1481)  评论(0)  编辑  收藏  举报