人类基因组三代组装： cano

git clone https://github.com/marbl/canu.git
cd canu/src
make -j <number of threads>

 

使用实例：

canu -p prefix_name -d /CloudHealth/softwares/canu/Linux-amd64/bin  genomeSize=3g  -pacbio-raw  subreads.fastq  gnuplotTested=true useGrid=false maxMemory=200 maxThreads=15 ovsMethod=sequential