Linux 使用记1 fastx toolkit安装问题

1

安装fastx toolkit的时候，步骤按https://blog.csdn.net/LotusWang0723/article/details/78723409

其中可能会出现如下报错

text_line_reader.cpp: In member function ‘bool TextLineReader::next_line()’:
text_line_reader.cpp:47:9: error: cannot convert ‘std::istream {aka std::basic_istream<char>}’ to ‘bool’ in return
  return input_stream ;
         ^~~~~~~~~~~~
make[3]: *** [text_line_reader.lo] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

 

可以找出问题文件，这样解决： 

更多信息：

https://reviews.freebsd.org/D14892?id=40873

https://stackoverflow.com/questions/38659115/make-fails-with-error-cannot-convert-stdistream-aka-stdbasic-istreamchar 

2.

在

这一步发生问题

 

Alternatively, you may set the environment variables GTEXTUTILS_CFLAGS
and GTEXTUTILS_LIBS to avoid the need to call pkg-config.
See the pkg-config man page for more details.

 然后输入命令解决

sudo apt-get install pkg-config && sudo pkg-config

 

 

3.

在安装fastx toolkit 时make的时候报错

fasta_formatter.cpp: In function ‘void parse_command_line(int, char**)’:
fasta_formatter.cpp:105:9: error: this statement may fall through [-Werror=implicit-fallthrough=]
usage();
~~~~~^~
fasta_formatter.cpp:107:3: note: here
case 'i':
^~~~
cc1plus: all warnings being treated as errors
make[3]: *** [Makefile:425: fasta_formatter.o] Error 1
make[3]: Leaving directory '/tmp/SBo/fastx_toolkit-0.0.14/src/fasta_formatter'