安装rpy2 报错<cdef source string>:23:5: before: blah1 解决办法就是直接下载一个rpy2的轮子
win7上安装rpy2, python环境是3.6.1。
使用pip install rpy2直接安装rpy2,对应的版本时rpy2 3.0.5
报如下错误:
ERROR: Complete output from command python setup.py egg_info: ERROR: Traceback (most recent call last): File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\cparser.py", line 276, in _parse ast = _get_parser().parse(fullcsource) File "d:\python_virtualenv\pandas0192\lib\site-packages\pycparser\c_parser.py", line 152, in parse debug=debuglevel) File "d:\python_virtualenv\pandas0192\lib\site-packages\pycparser\ply\yacc.py", line 331, in parse return self.parseopt_notrack(input, lexer, debug, tracking, tokenfunc) File "d:\python_virtualenv\pandas0192\lib\site-packages\pycparser\ply\yacc.py", line 1199, in parseopt_notrack tok = call_errorfunc(self.errorfunc, errtoken, self) File "d:\python_virtualenv\pandas0192\lib\site-packages\pycparser\ply\yacc.py", line 193, in call_errorfunc r = errorfunc(token) File "d:\python_virtualenv\pandas0192\lib\site-packages\pycparser\c_parser.py", line 1761, in p_error column=self.clex.find_tok_column(p))) File "d:\python_virtualenv\pandas0192\lib\site-packages\pycparser\plyparser.py", line 66, in _parse_error raise ParseError("%s: %s" % (coord, msg)) pycparser.plyparser.ParseError: <cdef source string>:23:5: before: blah1 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "<string>", line 1, in <module> File "C:\Users\ADMINI~1\AppData\Local\Temp\pip-install-n564fvky\rpy2\setup.py", line 184, in <module> 'rpy2': ['doc/source/rpy2_logo.png', ]} File "d:\python_virtualenv\pandas0192\lib\site-packages\setuptools\__init__.py", line 131, in setup return distutils.core.setup(**attrs) File "d:\program files\python361\Lib\distutils\core.py", line 108, in setup _setup_distribution = dist = klass(attrs) File "d:\python_virtualenv\pandas0192\lib\site-packages\setuptools\dist.py", line 370, in __init__ k: v for k, v in attrs.items() File "d:\program files\python361\Lib\distutils\dist.py", line 281, in __init__ self.finalize_options() File "d:\python_virtualenv\pandas0192\lib\site-packages\setuptools\dist.py", line 529, in finalize_options ep.load()(self, ep.name, value) File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\setuptools_ext.py", line 204, in cffi_modules add_cffi_module(dist, cffi_module) File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\setuptools_ext.py", line 49, in add_cffi_module execfile(build_file_name, mod_vars) File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\setuptools_ext.py", line 25, in execfile exec(code, glob, glob) File "rpy/_rinterface_cffi_build.py", line 546, in <module> """ if os.name == 'nt' else '' File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\api.py", line 107, in cdef self._cdef(csource, override=override, packed=packed) File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\api.py", line 121, in _cdef self._parser.parse(csource, override=override, **options) File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\cparser.py", line 315, in parse self._internal_parse(csource) File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\cparser.py", line 320, in _internal_parse ast, macros, csource = self._parse(csource) File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\cparser.py", line 278, in _parse self.convert_pycparser_error(e, csource) File "d:\python_virtualenv\pandas0192\lib\site-packages\cffi\cparser.py", line 307, in convert_pycparser_error raise CDefError(msg) cffi.error.CDefError: cannot parse "blah1 ReadConsole;" <cdef source string>:23:5: before: blah1 ---------------------------------------- ERROR: Command "python setup.py egg_info" failed with error code 1 in C:\Users\ADMINI~1\AppData\Local\Temp\pip-install-n564fvky\rpy2\
报错的大概意思是blah1 ReadConsole;这句话无法执行, 查看文件_rinterface_cffi_build.py,发现blah1这个类的定义在_rinterface_cffi_build.py文件中并没有。
在rpy2的最新的开源代码中,_rinterface_cffi_build.py文件中是有关于 "blah1"这个的定义的。源码网站地址: https://bitbucket.org/rpy2/rpy2/src/default/rpy/_rinterface_cffi_build.py
源码上是这样写的:
if os.name == 'nt': ffibuilder.cdef(""" typedef int (*blah1) (const char *, char *, int, int); typedef void (*blah2) (const char *, int); typedef void (*blah3) (void); typedef void (*blah4) (const char *); /* Return value here is expected to be 1 for Yes, -1 for No and * 0 for Cancel: symbolic constants in graphapp.h */ typedef int (*blah5) (const char *); typedef void (*blah6) (int); typedef void (*blah7) (const char *, int, int); typedef enum {RGui, RTerm, LinkDLL} UImode; """)
然后我试了把开源代码直接下载下来,然后使用python setup.py install方式安装,rpy2这回可以正常安装上了。
然后检查一下可不可以使用:
>>> import rpy2 >>> from rpy2.robjects.packages import importr Traceback (most recent call last): File "<stdin>", line 1, in <module> File "<frozen importlib._bootstrap>", line 961, in _find_and_load File "<frozen importlib._bootstrap>", line 950, in _find_and_load_unlocked File "<frozen importlib._bootstrap>", line 646, in _load_unlocked File "<frozen importlib._bootstrap>", line 616, in _load_backward_compatible File "D:\python_virtualenv\nlp_learn\lib\site-packages\rpy2-3.1.0.dev0-py3.6.egg\rpy2\robjects\__init__.py", line 14, in <module> File "<frozen importlib._bootstrap>", line 961, in _find_and_load File "<frozen importlib._bootstrap>", line 950, in _find_and_load_unlocked File "<frozen importlib._bootstrap>", line 646, in _load_unlocked File "<frozen importlib._bootstrap>", line 616, in _load_backward_compatible File "D:\python_virtualenv\nlp_learn\lib\site-packages\rpy2-3.1.0.dev0-py3.6.egg\rpy2\rinterface.py", line 5, in <module> File "<frozen importlib._bootstrap>", line 961, in _find_and_load File "<frozen importlib._bootstrap>", line 950, in _find_and_load_unlocked File "<frozen importlib._bootstrap>", line 646, in _load_unlocked File "<frozen importlib._bootstrap>", line 616, in _load_backward_compatible File "D:\python_virtualenv\nlp_learn\lib\site-packages\rpy2-3.1.0.dev0-py3.6.egg\rpy2\rinterface_lib\openrlib.py", line 21, in <module> File "D:\python_virtualenv\nlp_learn\lib\site-packages\rpy2-3.1.0.dev0-py3.6.egg\rpy2\rinterface_lib\openrlib.py", line 16, in _dlopen_rlib File "D:\python_virtualenv\nlp_learn\lib\site-packages\rpy2-3.1.0.dev0-py3.6.egg\rpy2\situation.py", line 71, in get_rlib_path ValueError: The system "%s" is not supported.
得,(¬_¬),这意思是不支持当前的系统。
找了一个rpy2的文档,文档上是这么说的:
Microsoft’s Windows - unofficial and unsupported binaries are provided by Christoph Gohlke (http://www.lfd.uci.edu/~gohlke/pythonlibs/); there is otherwise currently close to no support for this platform 文档地址: https://rpy2.github.io/doc/latest/html/overview.html#installation
就是说rpy2不支持windows这个平台,如果想要使用,请到https://www.lfd.uci.edu/~gohlke/pythonlibs/网站上去下载一个编译好的轮子。
这个网站上rpy2的最新版本是2.9.5, 选择好要下载的版本,选择好对应的系统, 下载完成后直接使用pip install + 轮子名称即可。
问题解决,早知道我直接去下个轮子就好了,还看了半天源码,浪费时间!!!