greencolor - 博客园

2010年10月7日

摘要： The program DAMMIN implements a method to restore ab initio low resolution shape of randomly oriented particles in solution (e.g., biological macromolecules) from its small angle X-ray scattering. A s... 阅读全文

posted @ 2010-10-07 22:37 greencolor 阅读(245) 评论(0) 推荐(0) 编辑

DAMMIF

摘要： DAMMIF, a tool for rapid ab-initio shape determination in small angle scattering, is a reimplementation of the well known bead-modelling programDAMMIN.In bead modeling a particle is represented as a c... 阅读全文

posted @ 2010-10-07 22:34 greencolor 阅读(149) 评论(0) 推荐(0) 编辑

Damsel

摘要： Damsel is a program that compares a set of models, finds the most probable one and outliers (usesSUPCOMB). Given several structures in PDB format, the program superimposes all possible pairs by callin... 阅读全文

posted @ 2010-10-07 22:24 greencolor 阅读(218) 评论(0) 推荐(0) 编辑

Damfilt

摘要： Damfilt is a program that filters an averaged model as created bydamaverat a given cut-off volume. Given the frequency map computed bydamaverand the value of a cut-off volume, damfilt removes low occu... 阅读全文

posted @ 2010-10-07 22:22 greencolor 阅读(143) 评论(0) 推荐(0) 编辑

2010年10月4日

Damaver

摘要： The program damaver averages aligned models and computes a probability map. More specifically, given a list of models in PDB format which are aligned to yield the best overlap (as a result fromdamsup)... 阅读全文

posted @ 2010-10-04 01:28 greencolor 阅读(183) 评论(0) 推荐(0) 编辑

CRYSON

摘要： CRYSON is a program for evaluating the solution scattering from macromolecules with known atomic structure and fitting it to experimental scattering curves from Small-Angle Neutron Scattering (SANS). ... 阅读全文

posted @ 2010-10-04 01:02 greencolor 阅读(236) 评论(0) 推荐(0) 编辑

CRYSOL

摘要： CRYSOLis a program for evaluating the solution scattering from macromolecules with known atomic structure and fitting it to experimental scattering curves from Small-Angle X-ray Scattering (SAXS). As ... 阅读全文

posted @ 2010-10-04 00:53 greencolor 阅读(313) 评论(0) 推荐(0) 编辑

2010年10月3日

BUNCH

摘要： BUNCH performs modeling of multidomain proteins against SAXS data using a combined rigid body and ab initio modeling approach. The program allows determination of three-dimensional domain structure of... 阅读全文

posted @ 2010-10-03 01:40 greencolor 阅读(135) 评论(0) 推荐(0) 编辑

2010年10月2日

AutoMerge

摘要： AutoMerge performs extrapolation, averaging of experimental .dat files. On the way it also assesses their quality, amount of data that is available from them, and checks that files in the same data se... 阅读全文

posted @ 2010-10-02 22:10 greencolor 阅读(516) 评论(0) 推荐(0) 编辑

AUTORG

摘要： AUTORG, is a command-line program to estimate the radius of gyration (Rg) using the well known Guinier approximationI(s) =I(0)exp(-s2Rg2/3).The value ofRgis estimated from the best possible linear fit... 阅读全文

posted @ 2010-10-02 21:15 greencolor 阅读(201) 评论(0) 推荐(0) 编辑

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