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SUPCOMB, is a program to superimpose one 3D structure onto another. These structures can be low-resolution bead models and/or high resolution NMR or x-ray crystal structures. The alignment of shape mo... 阅读全文
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SASREF performs quaternary structure modeling of a complex formed by subunits with known atomic structure against the SAXS data set. Further, it can simultaneously fit multiple SAXS data sets from the... 阅读全文
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Program PRIMUS perfoms the manipulations with experimental small-angle scattering data files such as: averaging, subtraction, merging, extrapolation to zero concentration and curve fitting and evaluat... 阅读全文
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Program PEAK is designed for evaluating the positions of peaks for scattering profiles and calculating the structural characteristics of the systems. PEAK is compiled using Intel Fortran v.11.0 with Q... 阅读全文
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The program OLIGOMER fits an experimental scattering curve from a multicompoment mixture of proteins to find the volume fractions of each component in the mixture.The input data for oligomer is experi... 阅读全文
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MONSA is an extended version ofDAMMINfor multiphase bead modelling which allows one to fit simultaneously multiple curves (e.g. from X-ray and/or neutron contrast variation series).Running MONSAMONSA ... 阅读全文
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Program MIXTURE makes the fitting to the experimental scattering curve by modelling the multicomponent system represented by simple geometrical bodies taking into account interparticle interactions. 阅读全文
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Modelling of atomic structures and shape analysis MASSHA is a 3D graphic system to display and manipulate atomic structures and low resolution models. The program is coupled with computational modules... 阅读全文
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GNOM is an indirect transform program for small-angle scattering data processing. It reads in one-dimensional scattering curves (possibly smeared with instrumental distortions) and evaluates the parti... 阅读全文
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GLOBSYMM performs a global search of the quaternary structure of a symmetric oligomer built from identical monomers (point symmetries Pnk, where n = 2...6, and k = 1, 2 are supported). Rotation of a m... 阅读全文
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GASBORis program forab initioreconstruction of protein structure by a chain-like ensemble ofdummy residues. It has been published along with the paperߵDetermination of domain structure of proteins fro... 阅读全文
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DIMFOM is a program for rigid body refinement of a homo- or heterodimeric structure composed of two subunitsAandB. Given the partial amplitudes and envelope function of the two subunits in reference o... 阅读全文
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Damsup is a program that aligns a set of models with one model that is considered the most probable one (as obtained fromdamsel). Given a list of models in PDB format, the program superimposes them wi... 阅读全文
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Given the frequency map computed bydamaverand the value of a cut-off volume, damstart generates a modification of thedamavermodel with fixed core for further use inDAMMINas an initial approximation. T... 阅读全文
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The program DAMMIN implements a method to restore ab initio low resolution shape of randomly oriented particles in solution (e.g., biological macromolecules) from its small angle X-ray scattering. A s... 阅读全文
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DAMMIF, a tool for rapid ab-initio shape determination in small angle scattering, is a reimplementation of the well known bead-modelling programDAMMIN.In bead modeling a particle is represented as a c... 阅读全文
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Damsel is a program that compares a set of models, finds the most probable one and outliers (usesSUPCOMB). Given several structures in PDB format, the program superimposes all possible pairs by callin... 阅读全文
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Damfilt is a program that filters an averaged model as created bydamaverat a given cut-off volume. Given the frequency map computed bydamaverand the value of a cut-off volume, damfilt removes low occu... 阅读全文