Graph database_neo4j 底层存储结构分析(4)

3.3.2   DynamicStore 类型

3.3.2.1        AbstractDynamicStore 的存储格式

neo4j 中对于字符串等变长值的保存策略是用一组定长的 block 来保存，block之间用单向链表链接。类 AbstractDynamicStore 实现了该功能，下面是其注释说明。

/**

 * An abstract representation of a dynamic store. The difference between a

 * normal AbstractStore and a AbstractDynamicStore is

 * that the size of a record/entry can be dynamic.

 * Instead of a fixed record this class uses blocks to store a record. If a

 * record size is greater than the block size the record will use one or more

 * blocks to store its data.

 * A dynamic store don’t have a IdGenerator because the position of a

 * record can’t be calculated just by knowing the id. Instead one should use a

 * AbstractStore and store the start block of the record located in the

 * dynamic store. Note: This class makes use of an id generator internally for

 * managing free and non free blocks.

 * Note, the first block of a dynamic store is reserved and contains information

 * about the store.

 */

 neo4j_文件存储格式_StringPropertyStore--20140412

AbstractDynamicStore 类对应的存储文件格式如上图所示, 整个文件是有一个block_size=BLOCK_HEADER_SIZE(8Bytes)+block_content_size的定长数组和一个字符串“StringPropertyStore v0.A.2”或“ArrayPropertyStore v0.A.2”或“SchemaStore v0.A.2”(文件类型描述TYPE_DESCRIPTOR和 neo4j 的 ALL_STORES_VERSION构成)。访问时，可以通过 id 作为数组的下标进行访问。其中，文件的第1个 record 中前4 字节用来保存 block_size。文件的第2个 record开始保存实际的block数据,它由8个字节的block_header和定长的 block_content（可配置）构成. block_header 结构如下:

  • inUse(1 Byte):第1字节,共分成3部分

[x__ ,    ]  0: start record, 1: linked record

[   x,    ]  inUse

[    ,xxxx]  high next block bits

    • 第1~4 bit 表示next_block 的高4位
    • 第5 bit表示block 是否在 use;
    • 第8 bit 表示 block 是否是单向链表的第1个 block；0 表示第1个block, 1表示后续 block.
  • nr_of_bytes(3Bytes)：本 block 中保存的数据的长度。
  • next_block(4Bytes): next_block 的低 4 个字节，加上 inUse 的第1~4 位，next_block 的实际长度共 36 bit。以数组方式存储的单向链表的指针，指向保存同一条数据的下一个 block 的id.

3.3.2.2        AbstractDynamicStore.java

下面看一下 AbstractDynamicStore.java 中 getRecord() 和readAndVerifyBlockSize() 成员函数，可以帮助理解 DynamicStore 的存储格式。

  • getRecord( long blockId, PersistenceWindow window, RecordLoad load )
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private DynamicRecord getRecord( long blockId, PersistenceWindow window, RecordLoad load )</pre>
<div>{
 
DynamicRecord record = new DynamicRecord( blockId );
 
Buffer buffer = window.getOffsettedBuffer( blockId );
 
/*
 
* First 4b
 
* [x   ,    ][    ,    ][    ,    ][    ,    ] 0: start record, 1: linked record
 
* [   x,    ][    ,    ][    ,    ][    ,    ] inUse
 
* [    ,xxxx][    ,    ][    ,    ][    ,    ] high next block bits
 
* [    ,    ][xxxx,xxxx][xxxx,xxxx][xxxx,xxxx] nr of bytes in the data field in this record
 
*
 
*/
 
long firstInteger = buffer.getUnsignedInt();
 
boolean isStartRecord = (firstInteger & 0x80000000) == 0;
 
long maskedInteger = firstInteger & ~0x80000000;
 
int highNibbleInMaskedInteger = (int) ( ( maskedInteger ) >> 28 );
 
boolean inUse = highNibbleInMaskedInteger == Record.IN_USE.intValue();
 
if ( !inUse && load != RecordLoad.FORCE )
 
{
 
throw new InvalidRecordException( "DynamicRecord Not in use, blockId[" + blockId + "]" );
 
}
 
int dataSize = getBlockSize() - BLOCK_HEADER_SIZE;
 
int nrOfBytes = (int) ( firstInteger & 0xFFFFFF );
 
/*
 
* Pointer to next block 4b (low bits of the pointer)
 
*/
 
long nextBlock = buffer.getUnsignedInt();
 
long nextModifier = ( firstInteger & 0xF000000L ) << 8;
 
long longNextBlock = longFromIntAndMod( nextBlock, nextModifier );
 
boolean readData = load != RecordLoad.CHECK;
 
if ( longNextBlock != Record.NO_NEXT_BLOCK.intValue()
 
&& nrOfBytes < dataSize || nrOfBytes > dataSize )
 
{
 
readData = false;
 
if ( load != RecordLoad.FORCE )
 
{
 
throw new InvalidRecordException( "Next block set[" + nextBlock
 
+ "] current block illegal size[" + nrOfBytes + "/" + dataSize + "]" );
 
}
 
}
 
record.setInUse( inUse );
 
record.setStartRecord( isStartRecord );
 
record.setLength( nrOfBytes );
 
record.setNextBlock( longNextBlock );
 
/*
 
* Data 'nrOfBytes' bytes
 
*/
 
if ( readData )
 
{
 
byte byteArrayElement[] = new byte[nrOfBytes];
 
buffer.get( byteArrayElement );
 
record.setData( byteArrayElement );
 
}
 
return record;
 
}
  • readAndVerifyBlockSize()
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</pre>
<div>protected void readAndVerifyBlockSize() throws IOException
 
{
 
ByteBuffer buffer = ByteBuffer.allocate( 4 );
 
getFileChannel().position( 0 );
 
getFileChannel().read( buffer );
 
buffer.flip();
 
blockSize = buffer.getInt();
 
if ( blockSize <= 0 )
 
{
 
throw new InvalidRecordException( "Illegal block size: " +
 
blockSize + " in " + getStorageFileName() );
 
}
 
}

3.3.2.3        类DynamicArrayStore, DynamicStringStore

类SchemaStore，DynamicArrayStore(ArrayPropertyStore), DynamicStringStore(StringPropertyStore)都是继承成自类AbstractDynamicStore，所以与类DynamicArrayStore, DynamicStringStore和 SchemaStore对应文件的存储格式，都是遵循AbstractDynamicStore的存储格式，除了block块的大小（block_size）不同外。

db 文件 存储类型 block_size
neostore.labeltokenstore.db.names StringPropertyStore NAME_STORE_BLOCK_SIZE=30
neostore.propertystore.db.index.keys StringPropertyStore NAME_STORE_BLOCK_SIZE=30
neostore.relationshiptypestore.db.names StringPropertyStore NAME_STORE_BLOCK_SIZE=30
neostore.propertystore.db.strings StringPropertyStore string_block_size=120
neostore.nodestore.db.labels ArrayPropertyStore label_block_size=60
neostore.propertystore.db.arrays ArrayPropertyStore array_block_size=120
neostore.schemastore.db SchemaStore BLOCK_SIZE=56

block_size 通过配置文件或缺省值来设置的，下面的代码片段展示了neostore.propertystore.db.strings 文件的创建过程及block_size 的大小如何传入。

1)        GraphDatabaseSettings.java

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</pre>
<div>public static final Setting string_block_size = setting("string_block_size", INTEGER, "120",min(1));
 
public static final Setting array_block_size = setting("array_block_size", INTEGER, "120",min(1));
 
public static final Setting label_block_size = setting("label_block_size", INTEGER, "60",min(1));</div>
<pre>
      2)        StoreFactory.java的Configuration 类
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</pre>
<div>public static abstract class Configuration
 
{
 
public static final Setting string_block_size = GraphDatabaseSettings.string_block_size;
 
public static final Setting array_block_size = GraphDatabaseSettings.array_block_size;
 
public static final Setting label_block_size = GraphDatabaseSettings.label_block_size;
 
public static final Setting dense_node_threshold = GraphDatabaseSettings.dense_node_threshold;
 
}

3)        StoreFactory.java的createPropertyStore 函数

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</pre>
<div>public void createPropertyStore( File fileName )
 
{
 
createEmptyStore( fileName, buildTypeDescriptorAndVersion( PropertyStore.TYPE_DESCRIPTOR ));
 
int stringStoreBlockSize = config.get( Configuration.string_block_size );
 
int arrayStoreBlockSize = config.get( Configuration.array_block_size )
 
createDynamicStringStore(new File( fileName.getPath() + STRINGS_PART), stringStoreBlockSize, IdType.STRING_BLOCK);
 
createPropertyKeyTokenStore( new File( fileName.getPath() + INDEX_PART ) );
 
createDynamicArrayStore( new File( fileName.getPath() + ARRAYS_PART ), arrayStoreBlockSize );
 
}

4)        StoreFactory.java的createDynamicStringStore函数

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</pre>
<div>private void createDynamicStringStore( File fileName, int blockSize, IdType idType )
 
{
 
createEmptyDynamicStore(fileName, blockSize, DynamicStringStore.VERSION, idType);
 
}

5)        StoreFactory.java的createEmptyDynamicStore 函数

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</pre>
<div>
/**
 
* Creates a new empty store. A factory method returning an implementation
 
* should make use of this method to initialize an empty store. Block size
 
* must be greater than zero. Not that the first block will be marked as
 
* reserved (contains info about the block size). There will be an overhead
 
* for each block of <CODE>AbstractDynamicStore.BLOCK_HEADER_SIZE</CODE>bytes.
 
*/
 
public void createEmptyDynamicStore( File fileName, int baseBlockSize,
 
String typeAndVersionDescriptor, IdType idType)
 
{
 
int blockSize = baseBlockSize;
 
// sanity checks
 
…
 
blockSize += AbstractDynamicStore.BLOCK_HEADER_SIZE;
 
// write the header
 
try
 
{
 
FileChannel channel = fileSystemAbstraction.create(fileName);
 
int endHeaderSize = blockSize
 
+ UTF8.encode( typeAndVersionDescriptor ).length;
 
ByteBuffer buffer = ByteBuffer.allocate( endHeaderSize );
 
buffer.putInt( blockSize );
 
buffer.position( endHeaderSize - typeAndVersionDescriptor.length() );
 
buffer.put( UTF8.encode( typeAndVersionDescriptor ) ).flip();
 
channel.write( buffer );
 
channel.force( false );
 
channel.close();
 
}
 
catch ( IOException e )
 
{
 
throw new UnderlyingStorageException( "Unable to create store "
 
+ fileName, e );
 
}
 
idGeneratorFactory.create( fileSystemAbstraction, new File( fileName.getPath() + ".id"), 0 );
 
// TODO highestIdInUse = 0 works now, but not when slave can create store files.
 
IdGenerator idGenerator = idGeneratorFactory.open(fileSystemAbstraction,
 
new File( fileName.getPath() + ".id"),idType.getGrabSize(), idType, 0 );
 
idGenerator.nextId(); // reserve first for blockSize
 
idGenerator.close();
 
}
posted @ 2015-06-02 10:40  GisClub  阅读(464)  评论(0)  编辑  收藏  举报