bioconductor包的安装
bioconductor 包的安装
安装R，并启动R。
> source("http://bioconductor.org/biocLite.R")
> biocLite()
Using R version 2.10.0 (R-devel), biocinstall version 2.5.5.
Installing Bioconductor version 2.5 packages:
[1] "affy" "affydata" "affyPLM" "annaffy"
[5] "annotate" "Biobase" "biomaRt" "Biostrings"
[9] "DynDoc" "gcrma" "genefilter" "geneplotter"
[13] "hgu95av2.db" "limma" "marray" "multtest"
[17] "vsn" "xtable" "affyQCReport"
Please wait...
also installing the dependencies ‘DBI’, ‘RSQLite’, ‘bitops’, ‘affyio’, ‘preprocessCore’, ‘GO.db’, ‘KEGG.db’, ‘AnnotationDbi’, ‘XML’, ‘RCurl’, ‘IRanges’, ‘RColorBrewer’, ‘org.Hs.eg.db’, ‘simpleaffy’
试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/DBI_0.2-4.zip'
Content type 'application/zip' length 375508 bytes (366 Kb)
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downloaded 366 Kb
试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/RSQLite_0.7-3.zip'
Content type 'application/zip' length 544274 bytes (531 Kb)
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downloaded 531 Kb
试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/bitops_1.0-4.1.zip'
Content type 'application/zip' length 17325 bytes (16 Kb)
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downloaded 16 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affyio_1.13.5.zip'
Content type 'application/zip' length 82858 bytes (80 Kb)
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downloaded 80 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/preprocessCore_1.7.9.zip'
Content type 'application/zip' length 118603 bytes (115 Kb)
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downloaded 115 Kb
试开URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/GO.db_2.3.5.zip'
Content type 'application/zip' length 15170627 bytes (14.5 Mb)
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downloaded 14.5 Mb
试开URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/KEGG.db_2.3.5.zip'
Content type 'application/zip' length 1608188 bytes (1.5 Mb)
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downloaded 1.5 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/AnnotationDbi_1.7.20.zip'
Content type 'application/zip' length 5035348 bytes (4.8 Mb)
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downloaded 4.8 Mb
试开URL’http://bioconductor.org/packages/2.5/extra/bin/windows/contrib/2.10/XML_2.6-0.zip'
Content type 'application/zip' length 2229321 bytes (2.1 Mb)
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downloaded 2.1 Mb
试开URL’http://bioconductor.org/packages/2.5/extra/bin/windows/contrib/2.10/RCurl_1.2-1.zip'
Content type 'application/zip' length 1789923 bytes (1.7 Mb)
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downloaded 1.7 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/IRanges_1.3.99.zip'
Content type 'application/zip' length 1521672 bytes (1.5 Mb)
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downloaded 1.5 Mb
试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/RColorBrewer_1.0-2.zip'
Content type 'application/zip' length 23811 bytes (23 Kb)
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downloaded 23 Kb
试开URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/org.Hs.eg.db_2.3.6.zip'
Content type 'application/zip' length 37316242 bytes (35.6 Mb)
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downloaded 35.6 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/simpleaffy_2.21.3.zip'
Content type 'application/zip' length 794649 bytes (776 Kb)
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downloaded 776 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affy_1.23.12.zip'
Content type 'application/zip' length 2033590 bytes (1.9 Mb)
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downloaded 1.9 Mb
试开URL’http://bioconductor.org/packages/2.5/data/experiment/bin/windows/contrib/2.10/affydata_1.11.10.zip'
Content type 'application/zip' length 12756979 bytes (12.2 Mb)
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downloaded 12.2 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affyPLM_1.21.4.zip'
Content type 'application/zip' length 3968938 bytes (3.8 Mb)
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downloaded 3.8 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/annaffy_1.17.2.zip'
Content type 'application/zip' length 371140 bytes (362 Kb)
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downloaded 362 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/annotate_1.23.4.zip'
Content type 'application/zip' length 2202749 bytes (2.1 Mb)
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downloaded 2.1 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/Biobase_2.5.8.zip'
Content type 'application/zip' length 2378491 bytes (2.3 Mb)
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downloaded 2.3 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/biomaRt_2.1.0.zip'
Content type 'application/zip' length 315686 bytes (308 Kb)
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downloaded 308 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/Biostrings_2.13.54.zip'
Content type 'application/zip' length 2149067 bytes (2.0 Mb)
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downloaded 2.0 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/DynDoc_1.23.1.zip'
Content type 'application/zip' length 99928 bytes (97 Kb)
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downloaded 97 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/gcrma_2.17.4.zip'
Content type 'application/zip' length 222812 bytes (217 Kb)
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downloaded 217 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/genefilter_1.26.4.zip'
Content type 'application/zip' length 705409 bytes (688 Kb)
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downloaded 688 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/geneplotter_1.23.3.zip'
Content type 'application/zip' length 1784562 bytes (1.7 Mb)
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downloaded 1.7 Mb
试开URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/hgu95av2.db_2.3.5.zip'
Content type 'application/zip' length 549126 bytes (536 Kb)
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downloaded 536 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/limma_3.0.3.zip'
Content type 'application/zip' length 1205953 bytes (1.2 Mb)
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downloaded 1.2 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/marray_1.23.0.zip'
Content type 'application/zip' length 5275041 bytes (5.0 Mb)
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downloaded 5.0 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/multtest_2.1.3.zip'
Content type 'application/zip' length 1642453 bytes (1.6 Mb)
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downloaded 1.6 Mb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/vsn_3.13.7.zip'
Content type 'application/zip' length 1494717 bytes (1.4 Mb)
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downloaded 1.4 Mb
试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/xtable_1.5-5.zip'
Content type 'application/zip' length 177954 bytes (173 Kb)
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downloaded 173 Kb
试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affyQCReport_1.23.1.zip'
Content type 'application/zip' length 229539 bytes (224 Kb)
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downloaded 224 Kb
package 'DBI' successfully unpacked and MD5 sums checked
package 'RSQLite' successfully unpacked and MD5 sums checked
package 'bitops' successfully unpacked and MD5 sums checked
package 'affyio' successfully unpacked and MD5 sums checked
package 'preprocessCore' successfully unpacked and MD5 sums checked
package 'GO.db' successfully unpacked and MD5 sums checked
package 'KEGG.db' successfully unpacked and MD5 sums checked
package 'AnnotationDbi' successfully unpacked and MD5 sums checked
package 'XML' successfully unpacked and MD5 sums checked
package 'RCurl' successfully unpacked and MD5 sums checked
package 'IRanges' successfully unpacked and MD5 sums checked
package 'RColorBrewer' successfully unpacked and MD5 sums checked
package 'org.Hs.eg.db' successfully unpacked and MD5 sums checked
package 'simpleaffy' successfully unpacked and MD5 sums checked
package 'affy' successfully unpacked and MD5 sums checked
package 'affydata' successfully unpacked and MD5 sums checked
package 'affyPLM' successfully unpacked and MD5 sums checked
package 'annaffy' successfully unpacked and MD5 sums checked
package 'annotate' successfully unpacked and MD5 sums checked
package 'Biobase' successfully unpacked and MD5 sums checked
package 'biomaRt' successfully unpacked and MD5 sums checked
package 'Biostrings' successfully unpacked and MD5 sums checked
package 'DynDoc' successfully unpacked and MD5 sums checked
package 'gcrma' successfully unpacked and MD5 sums checked
package 'genefilter' successfully unpacked and MD5 sums checked
package 'geneplotter' successfully unpacked and MD5 sums checked
package 'hgu95av2.db' successfully unpacked and MD5 sums checked
package 'limma' successfully unpacked and MD5 sums checked
package 'marray' successfully unpacked and MD5 sums checked
package 'multtest' successfully unpacked and MD5 sums checked
package 'vsn' successfully unpacked and MD5 sums checked
package 'xtable' successfully unpacked and MD5 sums checked
package 'affyQCReport' successfully unpacked and MD5 sums checked
The downloaded packages are in
C:\Documents and Settings\Administrator\Local Settings\Temp\RtmpCDatG2\downloaded_packages
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