2016年1月20日
Cufflinks
摘要： Transcriptome assembly and differential expression analysis for RNA-Seq.Cufflinks assembles transcripts, estimates their abundances, and tests for dif... 阅读全文
posted @ 2016-01-20 17:55 SamYangBio 阅读(377) 评论(0) 推荐(0) 编辑
TopHat
摘要： What is TopHat?TopHat is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast... 阅读全文
posted @ 2016-01-20 17:46 SamYangBio 阅读(464) 评论(0) 推荐(0) 编辑
bowtie1和bowtie2的比较
摘要： 1.对于长度大于50bp的reads，bowtie2更精确；而小于50bp的reads，bowtie1更精确更快速2.bowtie2支持的reads长度没有上限，当然reads长度在50~1000bp为宜；而bowtie1支持reads长度最长约为1000bp3.bowtie2的对比支持gap，而b... 阅读全文
posted @ 2016-01-20 17:08 SamYangBio 阅读(1153) 评论(0) 推荐(0) 编辑