plink:Error: Line X of .ped file has fewer tokens than expected.

运行命令plink --file test1 --het --out test_het出现的报错:"Error: Line 135 of .ped file has fewer tokens than expected."

出现这种报错有两种原因:

1、map文件的SNP数量与ped的数量对应不上;

2、缺失值少了一个0,如下图所示:

这种情况解决办法就是把另外一个0补充上,变成00:

posted @ 2022-08-16 14:18  橙子牛奶糖  阅读(1810)  评论(2编辑  收藏  举报