公共数据库信息汇总(20210926更新)

1. 人类基因组转录起始位点 TSS

http://reftss.clst.riken.jp/datafiles/current/human/refTSS_v3.1_human_coordinate.hg38.bed.gz
http://reftss.clst.riken.jp/datafiles/3.1/00README.txt

human refGene hg19 TSS:
https://raw.githubusercontent.com/Shicheng-Guo/AnnotationDatabase/master/hg19/refGene_hg19_TSS.bed

human refGene hg38 TSS:
https://raw.githubusercontent.com/Shicheng-Guo/AnnotationDatabase/master/hg38/refGene.hg38.TSS.bed

2. 各种match的数据类型

网址：https://www.encodeproject.org/

3. oncogenes/tumor suppressor genes 致癌基因/抑癌基因数据库

图片来源：http://www.bushmanlab.org/links/genelists

https://cancer.sanger.ac.uk/census
https://www.cancerquest.org/cancer-biology/cancer-genes#1
https://bioinfo.uth.edu/TSGene1.0/

4. iGenomes 不同物种的注释

https://support.illumina.com/sequencing/sequencing_software/igenome.html

5. SNP与转录因子

http://ccg.vital-it.ch/snp2tfbs/