centos中mpich的安装及使用
https://www.itdaan.com/blog/2017/04/29/4184b453ec6c.html
安装(腾讯云centos 6.5 64位)
yum list mpich*
查看有什么版本的mpich包,在此处有版本2的,所以装版本2的yum install mpich2 mpich2-devel mpich2-doc
which mpicc
发现找不到该命令find / -name "mpich"
然后会找到mpich的目录,可能会有好几个,有bin的那个就是我们要找的目录cd ~
vi .bashrc
- 在后面加上
MPI_ROOT=/usr/lib64/mpich
export PATH=$MPI_ROOT/bin:$PATH
这里的目录视具体情况而定source .bashrc
使之生效
使用(新建文件hello.c)
#include <mpi.h> #include <stdio.h> #include <math.h> int main(int argc,char* argv[]) { int myid, numprocs; int namelen; char processor_name[MPI_MAX_PROCESSOR_NAME]; MPI_Init(&argc,&argv);/* 初始化并行环境 */ MPI_Comm_rank(MPI_COMM_WORLD,&myid);/* 当前进程的ID号 */ MPI_Comm_size(MPI_COMM_WORLD,&numprocs);/* 进程的总數 */ MPI_Get_processor_name(processor_name,&namelen);/* 当前处理器的名称 */ fprintf(stderr,"Hello World! Process %d of %d on %s\n", myid, numprocs, processor_name); MPI_Finalize();/* 结束并行环境 */ return 0; }
- 1
mpicc -o hello hello.c mpirun -np 4 ./helloc
centos7(自测成功)
yum -y mpich*
[root@localhost ~]# yum -y mpich* Loaded plugins: fastestmirror No such command: mpich*. Please use /usr/bin/yum --help [root@localhost ~]# yum list mpich* Loaded plugins: fastestmirror Loading mirror speeds from cached hostfile * base: mirrors.163.com * epel: mirrors.tuna.tsinghua.edu.cn * extras: mirrors.163.com * updates: mirrors.163.com Installed Packages mpich-3.0.x86_64 3.0.4-10.el7 @base mpich-3.0-devel.x86_64 3.0.4-10.el7 @base mpich-3.0-doc.noarch 3.0.4-10.el7 @base Available Packages mpich-3.0.i686 3.0.4-10.el7 base mpich-3.0-autoload.x86_64 3.0.4-10.el7 base mpich-3.0-devel.i686 3.0.4-10.el7 base mpich-3.2.i686 3.2-2.el7 base mpich-3.2.x86_64 3.2-2.el7 base mpich-3.2-autoload.x86_64 3.2-2.el7 base mpich-3.2-devel.i686 3.2-2.el7 base mpich-3.2-devel.x86_64 3.2-2.el7 base mpich-3.2-doc.noarch 3.2-2.el7 base
yum install mpich3 mpich3-devel mpich3-doc #不可以,单独运行下面的 yum install mpich-3.0.x86_64 yum install mpich-3.0-devel.x86_64 yum install mpich-3.0-doc.noarch
Linux下MPI并行编程环境搭建配置
本文永久链接地址:http://www.lifeba.org/arch/linux_mpi.htmlMPI的全称是Message Passing Interface即标准消息传递界面,可以用于并行计算。MPI有多种实现版本,如MPICH, CHIMP以及OPENMPI。这里我们采用MPICH版本。
一、MPICH安装
下载:http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz
tar -xzvf soft/mpich-3.0.4.tar.gz
cd mpich-3.0.4/
./configure --prefix=/usr/local/mpich
make && make install
安装后加入环境变量/etc/profile,并执行 source /etc/profile
PATH=$PATH:/usr/local/mpich/bin
MANPATH=$MANPATH:/usr/local/mpich/man
export PATH MANPATH
二、单节点测试
复制源代码包下的examples目录到安装目录下
cp -r examples/ /usr/local/mpich
执行
mpirun -np 10 ./examples/cpi
输出结果如下:
Process 0 of 10 is on server150
Process 9 of 10 is on server150
Process 1 of 10 is on server150
Process 4 of 10 is on server150
Process 5 of 10 is on server150
Process 7 of 10 is on server150
Process 2 of 10 is on server150
Process 3 of 10 is on server150
Process 6 of 10 is on server150
Process 8 of 10 is on server150pi is approximately 3.1415926544231256, Error is 0.0000000008333325
wall clock time = 0.020644
如果我们现在想编译文件: 在/home/houqingdong下执行: mpicc -o hello hello.c 这时候会提醒:-bash:mpicc command not found 这是因为我们还没有配置路径
在命令行下输入: export PATH=/home/houqingdong/mpiexe/bin:$PATH 注意:这里仅仅是暂时的设置路径,在重启后效果会消失,如果想一劳永逸的配置,请google查询
看一下我们配置是否成功可以执行一下 echo $PATH 看一下输出结果中是否有我们的路径
三、集群配置
1、集群机器上面需要配置ssh登录权限。参考:Hadoop-0.21.0在linux分布式集群配置 中的ssh配置(密钥无密码登录)部分。
2、复制编译程序到其他机器上面
scp -r mpich server140:/usr/local/
scp -r mpich server151:/usr/local/
scp -r mpich server130:/usr/local/
scp -r mpich server143:/usr/local/
同时在每台机器上面相应加入环境变量中。
3、
在/usr/local/mpich 下新建servers文件,内容如下:
server150:2 #run 2 process
server140:2
server130:2
server143:2
server151:2
执行下面命令,并指定servers文件
mpiexec -n 10 -f servers ./examples/cpi
输出
Process 0 of 10 is on server150
Process 1 of 10 is on server150
Process 4 of 10 is on server140
Process 5 of 10 is on server140
Process 6 of 10 is on server143
Process 7 of 10 is on server143
Process 8 of 10 is on server130
Process 9 of 10 is on server130
Process 2 of 10 is on server151
Process 3 of 10 is on server151
pi is approximately 3.1415926544231256, Error is 0.0000000008333325
wall clock time = 0.018768
四、参考资料