TWAS分析(二) MetaXcan 

python /data/yxh/software/MetaXcan/software/SPrediXcan.py \
--model_db_path /data/yxh/software/MetaXcan/data/data/DGN-WB_0.5.db \
--covariance /data/yxh/software/MetaXcan/data/data/covariance.DGN-WB_0.5.txt.gz \
--gwas_folder /data/yxh/software/MetaXcan/data/data/GWAS \
--gwas_file_pattern ".*gz" \
--snp_column SNP \
--effect_allele_column A1 \
--non_effect_allele_column A2 \
--beta_column BETA \
--pvalue_column P \
--output_file /data/yxh/software/MetaXcan/result/test.csv
posted @ 2020-10-21 18:01  biostat_yu  阅读(899)  评论(0)  编辑  收藏  举报