为SNP增加种族人群频率

一、Ensemble:http://www.ensembl.info/2015/06/18/1000-genomes-phase-3-frequencies-genotypes-and-ld-data/

二、安装API

git clone https://github.com/Ensembl/ensembl.git
git clone https://github.com/Ensembl/ensembl-variation.git
git clone https://github.com/Ensembl/ensembl-funcgen.git
git clone https://github.com/Ensembl/ensembl-compara.git
git clone https://github.com/Ensembl/ensembl-io.git

#Can't locate DBI.pm
sudo apt-get install libdbi-perl

#Can't locate DBD/mysql.pm
sudo apt-get install libdbd-mysql-perl

#Can't locate Try/Tiny.pm
sudo apt-get install libpath-tiny-perl
#或者
sudo cpan -i Try::Tiny

#Can't locate Bio/DB/HTS/Tabix.pm
git clone https://github.com/Ensembl/Bio-DB-HTS.git
#如果perl INSTALL.pl安装失败的话,将INSTALL.pl198行注释点,再试试

 

posted @ 2018-10-08 17:03  1直在路上1  阅读(224)  评论(0编辑  收藏  举报