POJ3080——Blue Jeans(暴力+字符串匹配)

Blue Jeans

Description
The Genographic Project is a research partnership between IBM and The National Geographic Society that is analyzing DNA from hundreds of thousands of contributors to map how the Earth was populated.
As an IBM researcher, you have been tasked with writing a program that will find commonalities amongst given snippets of DNA that can be correlated with individual survey information to identify new genetic markers.
A DNA base sequence is noted by listing the nitrogen bases in the order in which they are found in the molecule. There are four bases: adenine (A), thymine (T), guanine (G), and cytosine (C). A 6-base DNA sequence could be represented as TAGACC.
Given a set of DNA base sequences, determine the longest series of bases that occurs in all of the sequences.
Input
Input to this problem will begin with a line containing a single integer n indicating the number of datasets. Each dataset consists of the following components:
A single positive integer m (2 <= m <= 10) indicating the number of base sequences in this dataset.
m lines each containing a single base sequence consisting of 60 bases.
Output
For each dataset in the input, output the longest base subsequence common to all of the given base sequences. If the longest common subsequence is less than three bases in length, display the string "no significant commonalities" instead. If multiple subsequences of the same longest length exist, output only the subsequence that comes first in alphabetical order.
Sample Input
3
2
GATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3
GATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATA
GATACTAGATACTAGATACTAGATACTAAAGGAAAGGGAAAAGGGGAAAAAGGGGGAAAA
GATACCAGATACCAGATACCAGATACCAAAGGAAAGGGAAAAGGGGAAAAAGGGGGAAAA
3
CATCATCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ACATCATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AACATCATCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Sample Output
no significant commonalities
AGATAC
CATCATCAT

题目大意：

　　　　输入N个DNA序列，每个DNA序列长度都为60。

　　　　找到最长共有子序列。

　　　　PS1：若长度相同输出字典序最小的

　　　　PS2：若最长子序列长度小于2，则输出no significant commonalities

解题思路：

　　　　暴力枚举第一个DNA序列的每一个子序列，用strstr()函数与2-N序列进行匹配。

Code：

 1 #include<stdio.h>
 2 #include<string>
 3 #include<cstring>
 4 #include<iostream>
 5 using namespace std;
 6 char str[100][100];
 7 void cpy(char *tmp,int i,int j)
 8 {
 9     int t=0,k;
10     for (k=i; k<=j; k++)
11         tmp[t++]=str[1][k];
12     tmp[t]=0;
13 }
14 void cmp(char *ans,char *tmp)
15 {
16     if (strlen(ans)<strlen(tmp)) strcpy(ans,tmp);
17     else if (strlen(ans)==strlen(tmp)&&strcmp(ans,tmp)>0)
18         strcpy(ans,tmp);
19 }
20 int main()
21 {
22     int T;
23     cin>>T;
24     while (T--)
25     {
26         int N;
27         char tmp[100];
28         cin>>N;
29         char ans[1000]= {0};
30         for (int i=1; i<=N; i++)
31             cin>>str[i];
32         for (int i=0; i<=59; i++)
33             for (int j=i; j<=59; j++)
34             {
35                 cpy(tmp,i,j);
36                 int k;
37                 for (k=2; k<=N; k++)
38                     if (strstr(str[k],tmp)==NULL) break;
39                 if (k==N+1) 
40                     cmp(ans,tmp);
41             }
42         if (strlen(ans)>=3) printf("%s\n",ans);
43         else printf("no significant commonalities\n");
44     }
45     return 0;
46 }
posted @ 2014-07-25 12:12  Enumz  阅读(236)  评论(0)  编辑  收藏  举报