10X中的h5文件合适

转自：https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/advanced/h5_matrices

1.描述

ColumnTypeDescription
barcodes string Barcode sequences and their corresponding GEM wells (e.g. AAACGGGCAGCTCGAC-1)
data uint32 Nonzero UMI counts in column-major order
indices uint32 Zero-based row index of corresponding element in data
indptr uint32 Zero-based index into data / indices of the start of each column, i.e., the data corresponding to each barcode sequence
shape uint64 Tuple of (# rows, # columns) indicating the matrix dimensions

 

2.H5文件层次结构

(root)
└── matrix [HDF5 group]
    ├── barcodes
    ├── data
    ├── indices
    ├── indptr
    ├── shape
    └── features [HDF5 group]
        ├─ _all_tag_keys
        ├─ feature_type
        ├─ genome
        ├─ id
        ├─ interval [cellranger-arc only]
        └─ name

 

posted @ 2021-07-04 22:00  lypbendlf  阅读(172)  评论(0)  编辑  收藏  举报